Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs6453068 chr5:73929841 T/C 8.99E-5 183 13.03 14.32 3.47 KM Plot
ESCA rs6469856 chr8:120887364 G/A 2.25E-7 180 3.47 18.57 12.9 KM Plot
ESCA rs6494343 chr15:62958113 A/G 0.000104 184 13.4 12.83 7.05 KM Plot
ESCA rs6560074 chr9:90921391 T/C 1.86E-7 181 13.37 13.1 3.7 KM Plot
ESCA rs66935240 chr8:41352448 A/G 1.9E-7 183 13.02 17.27 2.7 KM Plot
ESCA rs6722 chr7:150068933 T/C 5.46E-6 181 12.8 15.4 12.4 KM Plot
ESCA rs67683968 chr8:41364319 G/A 1.9E-7 183 13.02 17.27 2.7 KM Plot
ESCA rs6819833 chr4:10027354 C/G 3.69E-5 184 13.22 13.6 8.1 KM Plot
ESCA rs6850166 chr4:10043688 C/T 6.73E-6 180 13.22 13.87 8.02 KM Plot
ESCA rs6857001 chr4:10018080 G/A 1.39E-5 183 13.07 13.87 7.93 KM Plot
ESCA rs6902913 chr6:146111423 C/T 2.64E-5 184 9.77 13.5 13.57 KM Plot
ESCA rs6921461 chr6:132899665 A/G 2.87E-5 184 12.97 13.57 3.2 KM Plot
ESCA rs6922610 chr6:145689046 G/C 2.23E-5 181 13.5 13.22 8.1 KM Plot
ESCA rs6928007 chr6:146074941 G/A 9.6E-5 184 10.1 13.5 13.57 KM Plot
ESCA rs6933161 chr6:146081369 G/A 7.16E-5 183 10.1 13.6 13.57 KM Plot